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Intervention scenario names across the transmission grid

Source: R/constants.R
int_scenario.Rd

Each intervention is run at every EIR in PROFILE_EIR. The run at the reference EIR keeps the bare intervention name, so names that predate the grid keep their meaning; the others carry an _e<EIR> suffix. int_scenario() builds names and int_parts() splits them.

Usage

int_scenario(intervention, eir, ref = EIR_REF)

int_parts(scenario, ref = EIR_REF)

Arguments

intervention

Intervention names, from names(INT_LABELS) or names(INT_LABELS_PV).

eir

Transmission intensities. intervention and eir are recycled to a common length.

ref

Reference EIR, whose runs carry the bare name: EIR_REF for the P. falciparum suite, EIR_REF_PV for the P. vivax suite.

scenario

Scenario names, as they appear in the saved CSVs.

Value

int_scenario(): a character vector of scenario names. int_parts(): a data frame with columns intervention and eir.

Examples

int_scenario("nets", PROFILE_EIR)
#> [1] "nets_e3"   "nets"      "nets_e120"
int_parts(c("nets", "nets_e3", "nets_e120"))
#>   intervention eir
#> 1         nets  20
#> 2         nets   3
#> 3         nets 120