The settings every comparison script has to agree on, in one place so they cannot drift apart between the script that runs the IBM and the script that plots the result.
Usage
VDIR()
BURN_Y
POP
N_REP
AGE_EDGES
SEASON
EIR_GRID
EIR_REF
PROFILE_EIR
INT_LABELS
TS_LABELS
TS_YEARS
TS_NET_EVERYFormat
An object of class integer of length 1.
An object of class integer of length 1.
An object of class integer of length 1.
An object of class numeric of length 13.
An object of class list of length 3.
An object of class numeric of length 6.
An object of class numeric of length 1.
An object of class numeric of length 3.
An object of class character of length 6.
An object of class character of length 5.
An object of class integer of length 1.
An object of class integer of length 1.
Details
VDIR()directory holding the optional site-file validation results, which live in their own checkout beside this one. Override with the
FLEET_VALIDATEenvironment variable. The site figure and its table are skipped when it is absent.BURN_YIBM burn-in years before observation or intervention.
POPIBM human population.
N_REPIBM replicates per scenario.
AGE_EDGESage-profile band edges, in years.
SEASONFourier coefficients for the seasonal rainfall profile.
EIR_GRIDthe transmission-intensity grid.
EIR_REFreference EIR for age profiles and interventions.
PROFILE_EIRthe low / reference / high transmission levels that shape claims are carried at.
INT_LABELS,TS_LABELSdisplay labels, in display order.
TS_YEARS,TS_NET_EVERYlong-horizon programme timings.
