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The settings every comparison script has to agree on, in one place so they cannot drift apart between the script that runs the IBM and the script that plots the result.

Usage

VDIR()

BURN_Y

POP

N_REP

AGE_EDGES

SEASON

EIR_GRID

EIR_REF

PROFILE_EIR

INT_LABELS

TS_LABELS

TS_YEARS

TS_NET_EVERY

Format

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class numeric of length 13.

An object of class list of length 3.

An object of class numeric of length 6.

An object of class numeric of length 1.

An object of class numeric of length 3.

An object of class character of length 6.

An object of class character of length 5.

An object of class integer of length 1.

An object of class integer of length 1.

Details

VDIR()

directory holding the optional site-file validation results, which live in their own checkout beside this one. Override with the FLEET_VALIDATE environment variable. The site figure and its table are skipped when it is absent.

BURN_Y

IBM burn-in years before observation or intervention.

POP

IBM human population.

N_REP

IBM replicates per scenario.

AGE_EDGES

age-profile band edges, in years.

SEASON

Fourier coefficients for the seasonal rainfall profile.

EIR_GRID

the transmission-intensity grid.

EIR_REF

reference EIR for age profiles and interventions.

PROFILE_EIR

the low / reference / high transmission levels that shape claims are carried at.

INT_LABELS, TS_LABELS

display labels, in display order.

TS_YEARS, TS_NET_EVERY

long-horizon programme timings.