Shared scenario constants — scenario-constants • fleetcheck

Settings that every comparison script must agree on, defined once so the script that runs the IBM and the script that plots the result cannot differ.

Usage

VDIR()

BURN_Y

POP

N_REP

AGE_EDGES

SEASON

EIR_GRID

EIR_REF

PROFILE_EIR

EIR_GRID_PV

EIR_REF_PV

PROFILE_EIR_PV

INT_LABELS_PV

INT_LABELS

TS_LABELS

TS_YEARS

TS_NET_EVERY

Format

An object of class integer of length 1.

An object of class numeric of length 13.

An object of class list of length 3.

An object of class numeric of length 6.

An object of class numeric of length 1.

An object of class numeric of length 3.

An object of class numeric of length 5.

An object of class numeric of length 1.

An object of class numeric of length 3.

An object of class character of length 5.

An object of class character of length 6.

An object of class character of length 5.

An object of class integer of length 1.

Details

VDIR(): Directory holding the optional site-file validation results, in their own checkout beside this one (../fleet_validate). The FLEET_VALIDATE environment variable overrides it. The site figure and its table are skipped when the directory is absent.
BURN_Y: IBM burn-in, in years, before observation or intervention.
POP: IBM human population.
N_REP: IBM replicates per scenario.
AGE_EDGES: Age-profile band edges, in years.
SEASON: Fourier coefficients of the seasonal rainfall profile.
EIR_GRID: Transmission-intensity (EIR) grid.
EIR_REF: Reference EIR for age profiles and interventions.
PROFILE_EIR: Low, reference and high EIRs at which the age-profile and intervention claims are tested.
INT_LABELS, TS_LABELS: Display labels, in display order.
EIR_GRID_PV, EIR_REF_PV, PROFILE_EIR_PV, INT_LABELS_PV: The same for the P. vivax suite, which has its own lower grid and no chemoprevention or vaccines.
TS_YEARS, TS_NET_EVERY: Years followed after deployment, and years between net campaigns, in the long-horizon programme scenarios.