Package index

Run the model

Simulate malaria transmission dynamics with the deterministic mean-field ODE model.

run_simulation_ode()

Run the mean-field (ODE) malaria model.

Solver settings

Numerical tolerances and the discretisation of the age grid, the Erlang lag chains and the prophylaxis compartments. Every default is the validated choice: change one only when you have a reason to.

ode_tuning()

ODE solver and discretisation settings.

Age grid

The default graded age discretisation used throughout the model.

default_age_lower()

Default (graded) age grid

Package overview

Background, scope, and pointers to the mean-field approximations.

fleet fleet-package

fleet: a mean-field (ODE) twin of malariasimulation